Index

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__init__() (htf.tensorflowcompute.tfcompute method) (layers.RBFExpansion method) (layers.WCARepulsion method) (simmodel.MolSimModel method) (simmodel.SimModel method)

A

attach() (htf.tensorflowcompute.tfcompute method)

C

center_of_mass() (in module utils) compute() (simmodel.MolSimModel method) (simmodel.SimModel method), [1] compute_adj_mat() (in module utils) compute_cg_graph() (in module utils) compute_nlist() (in module utils)

compute_nlist_forces() (in module simmodel) compute_ohe_bead_type_interactions() (in module utils) compute_pairwise() (in module utils) compute_positions_forces() (in module simmodel) compute_rdf() (in module simmodel) create_frame() (in module utils)

E

EDSLayer (class in layers)

enable_mapped_nlist() (htf.tensorflowcompute.tfcompute method)

F

find_cgnode_id() (in module utils)

find_molecules() (in module utils) find_molecules_from_topology() (in module utils)

G

gen_bonds_group() (in module utils) gen_mapped_exclusion_list() (in module utils) get_forces_array() (htf.tensorflowcompute.tfcompute method)

get_nlist_array() (htf.tensorflowcompute.tfcompute method) get_positions_array() (htf.tensorflowcompute.tfcompute method) get_virial_array() (htf.tensorflowcompute.tfcompute method)

I

iter_from_trajectory() (in module utils)

M

mapped_nlist() (simmodel.MolSimModel method), [1] (simmodel.SimModel method), [1] mapped_positions() (simmodel.MolSimModel method), [1] (simmodel.SimModel method), [1] masked_nlist() (in module simmodel) matrix_mapping() (in module utils)

mol_angle() (in module utils) mol_bond_distance() (in module utils) mol_compute() (simmodel.MolSimModel method), [1] mol_dihedral() (in module utils) mol_features_multiple() (in module utils) MolSimModel (class in simmodel), [1]

N

nlist_rinv() (in module simmodel)

R

RBFExpansion (class in layers)

retrace_compute() (simmodel.MolSimModel method), [1] (simmodel.SimModel method), [1]

S

safe_norm() (in module simmodel) set_reference_forces() (htf.tensorflowcompute.tfcompute method) setup() (simmodel.MolSimModel method), [1] (simmodel.SimModel method), [1]

SimModel (class in simmodel), [1] simmodel (module) sparse_mapping() (in module utils)

T

tfcompute (class in htf.tensorflowcompute)

U

utils (module)

W

WCARepulsion (class in layers)

wrap_vector() (in module simmodel)